Oct 14, 2020

Public workspaceWestern Blot

This protocol is a draft, published without a DOI.
  • 1Lankenau Institute for Medical Research
  • LIMR
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Protocol CitationJames D Montgomery 2020. Western Blot. protocols.io https://protocols.io/view/western-blot-bm6ik9ce
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: October 08, 2020
Last Modified: October 14, 2020
Protocol Integer ID: 42922
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Materials
MATERIALS
ReagentNuPAGE Antioxidant Thermo Fisher ScientificCatalog #NP0005
Reagent12-well NUPAGE 10% Tris-Bis gelThermo Fisher ScientificCatalog #NP0302BOX
ReagentMethanolFisher ScientificCatalog #A452-4
ReagentNuPAGE™ MOPS SDS Running Buffer (20X)Thermo FisherCatalog #NP0001
ReagentNuPAGE™ LDS Sample Buffer (4X)Thermo FisherCatalog #NP0007
ReagentNuPAGE™ Sample Reducing Agent (10X)Thermo FisherCatalog #NP0009
ReagentNuPAGE™ transfer buffer Thermo Fisher ScientificCatalog #NP0006




Gel Electrophoresis
Gel Electrophoresis
Make loading dye using LDS Sample Buffer (4X) and Reducing agent (10X). For Amount20 µL of sample, add Amount7.5 µL sample buffer and Amount3.5 µL reducing agent, keeping in mind that each well holds Amount30 µL total.

Combine sample and loading dye and heat at Temperature95 °C for Duration00:05:00 .

Prepare precast gel by removing comb and the tape at the bottom of the gel chamber, making sure to remove any excess gel that could block the top of the wells. Construct the gel chamber in the gel tank such that the well openings of the precast are facing inwards toward eachother. Fill the gel chamber with Amount200 mL ((1X) MOPS running buffer and Amount500 µL antioxidant.

Remove samples from heat and cool TemperatureOn ice for Duration00:05:00 .

Spin samples at 10K for Duration00:05:00

Load samples into gel using hamilton pipette tips. Be sure to record the order of the samples in the gel noting that samples on the edges of the gel are more likely to become distorted. Placing the marker in the middle most gel will provide a more reliable size ladder for size estimation.
Run gel at 100V for Duration01:30:00 or until the protein has migrated far enough into the gel.
Transfer
Transfer
While the gel is running prepare Amount1 L Transfer Buffer using Amount850 mL DiH20 , Amount50 mL 10x Transfer Buffer , and Amount100 mL methanol and place in cold room for duration of gel run.

Soak membrane (for PVDF soak membrane in methanol, for nitrocellulose soak membrane in transfer buffer.) Do not touch membrane with ungloved hands.
Soak sandwhich components (2 sheets of filter paper and 2 pads) until completely damp. Make sandwhich being careful to avoid trapping any air between layers. Place cassette in transfer tank with transfer buffer and run for 1 hour.
Blocking
Blocking
Remove membrane from sandwhich, noting the orientation relative to the gel. Wash the membrane in 1X PBST for Duration00:05:00

Block membrane for Duration01:00:00 with 5% milk in PBST

Blot with desired Ab.