Aug 30, 2023
Tissue clearing of human cardiac tissues using modified iDISCO+ protocol
- Peter Hanna1,
- Kalyanam Shivkumar1,
- Shumpei Mori1,
- Olujimi Ajijola1
- 1UCLA
Protocol Citation: Peter Hanna, Kalyanam Shivkumar, Shumpei Mori, Olujimi Ajijola 2023. Tissue clearing of human cardiac tissues using modified iDISCO+ protocol. protocols.io https://dx.doi.org/10.17504/protocols.io.yxmvm3eo9l3p/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: August 25, 2023
Last Modified: August 30, 2023
Protocol Integer ID: 86984
Funders Acknowledgement:
NIH
Grant ID: OT2OD023848
Abstract
The purpose of this protocol is to evaluate the myocardial innervation of the human heart. Using donor hearts rejected for human transplantation, imaging of the heart was performed, and sections of the heart underwent tissue clearing and confocal imaging.
Tissue Fixation
Tissue Fixation
Donor human hearts are obtained from the organ procurement organization and undergo perfusion fixation.
Suture three of the pulmonary veins and the inferior vena cava closed. One pulmonary vein and the superior vena cava are left patent as outflow of perfusate.
Cannulate aortic root and pulmonary artery with 24 Fr cannulas.
Perfuse 4% paraformaldehyde (PFA) via these cannulas at flow rates to distend the cardiac chambers for 24 hours at 4oC.
Wash the heart to remove PFA with 0.01 mol/L phosphate buffered saline (PBS) perfusate for 30 minutes via the cannulas followed by three 0.01 mol/L PBS washes for 30 min.
Store the heart in 0.01 mol/L PBS/0.02% sodium azide at 4oC until processing for immunohistochemistry or modified immunolabeling-enabled three-Dimensional
Imaging of Solvent-Cleared Organs (iDISCO+) tissue clearing.
CT imaging, Photography and Dissections of Specimens
CT imaging, Photography and Dissections of Specimens
The heart is suspended in a container and scanned with a 64-multidetector-row computed tomographic scanner (SOMATOM Definition AS, Siemens Healthcare, Forchheim, Germany) with the following parameters: tube voltage, 120 kV; tube current, 800-900 mA; field of view, 100-200 mm; section thickness, 0.6 mm; an incremental interval, 0.3 mm; matrix size, 512*512, and dose length product, 500-1200 mGy*cm. Postprocedural analysis is performed using commercially available software (Ziostation2; Ziosoft, Tokyo, Japan).
Specimens are dissected using either a #11 surgical scalpel or Metzenbaum scissors to generate adjacent samples intended for immunohistochemistry or tissue clearing using the modified immunolabeling-enabled three-Dimensional Imaging of Solvent-Cleared Organs (iDISCO+) protocol.
Hearts are photographed serially during dissection using a Nikon D850 DSLR camera with Nikon AF Micro-NIKKOR 200mm f/4D IF-ED lens.
Tissue Clearing using iDISCO+ Protocol
Tissue Clearing using iDISCO+ Protocol
Fixed tissue undergo graded methanol (MeOH) dehydration (20, 40, 60 and 80% MeOH in diH2O [vol/vol]) for 1 hour each at room temperature (RT) with agitation.
Specimens are washed twice with 100% MeOH for 1 hour at RT and incubated in 66% dichloromethane/33% MeOH overnight at RT with agitation.
Tissues are then washed twice in 100% MeOH for 1 hour at RT, chilled at 4oC and then bleached in 5% H2O2 in MeOH (vol/vol) overnight at 4oC.
The tissues are rehydrated with a graded MeOH series and washed in 0.01 M PBS for 1 hour each at RT with agitation.
The tissues are washed in 0.01 M PBS with 0.2% Triton X-100 for 1 hour at RT.
Tissues are then stained by permeabilizing in 0.01 M PBS, 0.2% Triton X-100, 20% dimethyl sulfoxide (DMSO) and 0.3 M glycine and blocking in 0.01 M PBS with 0.2% Triton X-100, 10% DMSO and 5% donkey serum, each for 2 days at 37oC with agitation.
Tissues are then incubated in primary antibodies rabbit anti-protein gene product 9.5 (PGP9.5; Abcam, ab108986, 1:200) and sheep anti-tyrosine hydroxylase (TH; Millipore, AB1542, 1:200) diluted in 0.01 M PBS with 0.2% Tween-20 and 10mg/ml heparin (PTwH) for 1 week at 37oC with agitation to stain. PGP9.5 serves as a pan-neuronal marker while TH serves as a marker of sympathetic neurons. Primary antibodies are replenished mid-week.
Tissues are washed 4 to 5 times in PTwH overnight at RT and incubated with secondary antibodies donkey anti-rabbit Cy3 (Jackson ImmunoResearch, 711-165-152, 1:300) and donkey anti-sheep 647 (Jackson ImmunoResearch, 713-605-147, 1:300) for 1 week at 37oC with agitation. Secondary antibodies are replenished mid-week.
Tissues are again washed in PTwH 4-5 times overnight at RT.
To clear, tissues are dehydrated with a graded MeOH series as above and incubated in 66% dichloromethane/33% MeOH for 3 hours at RT with agitation.
Tissues are washed twice in 100% dichloromethane for 15 minutes at RT and cleared, stored, and imaged in benzyl ether (Millipore Sigma, Catalog 108014; refractive index: 1.55).
Confocal Imaging of Cleared Tissues
Confocal Imaging of Cleared Tissues
Each iDISCO+-cleared tissue is placed in a chamber (SunJin Lab) filled with
benzyl ether on a slide, and a coverslip applied.
Tilescan and Z stack images are obtained using a Zeiss LSM 880 confocal laser scanning microscope with a Fluar 5x/0.25 M27 Plan-Apochromat and 10x lens.
Images are obtained at a resolution of 1024 x 1024 using 488, 561, and 633 nm laser lines. Z-axis step size is commensurate with Nyquist sampling based on numerical aperture of the specified objective. Pinhole is set to 1 airy unit.
Stitched images are analyzed in Zeiss Zen Black SR and Bitplane Imaris 9.5.1
for 3-dimensional visualization.