A | B | C | D | |
Item | Supplier | Catalogue Ref. | Preparation prior use | |
UltraPure DNase/RNase-Free Distilled Water | Thermo Fisher | 10977049 | Aliquot and keep at RT | |
PBS (Phosphate Buffered Saline) 10X Solution (pH 7.4) | Thermo Fisher | 15815418 | Make 1x with dH2O and store at 4°C | |
50x cOmplete Protease Inhibitor Cocktail EDTA-free | Roche via Sigma Aldrich | 4693159001 | Use 1 tablet in 1 ml dH2O and store at -20°C | |
Triton-X100 | Sigma Aldrich | T9287 | Prepare 10% aliquot and store at RT | |
ODGM (Optiprep Density Gradient Medium) | Sigma Aldrich | D1556 | Aliquot and keep at 4°C | |
Dithiothreitol (DTT) | Prepare 1 mM and keep aliquots at -20°C | |||
Sucrose | Prepare 1 M and keep at -20°C |
A | B | C | |
Item | Supplier | Catalogue Ref. | |
EasyDip™ slide staining system | Simport | M905-12DGY | |
SuperFrost Ultra Plus™ GOLD Adhesion Slides | Epredia™ | 11976299 | |
Glass coverslips 22mm x 22mm | VWR | 631-0124 | |
Glass coverslips 22mm x 50mm | VWR | 631-0137 | |
FixoGum Rubber Cement | Marabu | 29010017000 | |
Nail Varnish | |||
1.5mL Polypropylene DNA LoBind Microcentrifuge Tubes | Eppendorf™ | 0030108418 | |
0.2mL PCR Tubes | Eppendorf™ | 951010006 |
A | B | C | D | |
Reagent Name | Supplier | Catalogue Ref. | Preparation prior to use | |
Methanol >99.5% Pure | Thermo Fisher | M/4000/21 | No | |
Glacial Acetic Acid | Thermo Fisher | BP1185 | No | |
Magnesium Chloride Hexahydrate, BioXtra, ≥99.0% | Sigma-Aldrich | M2670 | Dissolve 1 M in dH2O and store at RT | |
Pepsin 1g from porcine gastric mucosa | Sigma | D1000 | Prepare 10% solution and store in aliquots at -20°C | |
1M Hydrochloric acid (HCl) | Thermo Fisher | 124210025 | No | |
UltraPure™ Formamide | Thermo Fisher | 15515026 | No | |
20X SSC Buffer, Molecular Grade | Promega | V4261 | 2X solution in dH2O and stored at RT | |
UltraPure™ DNase/RNase-Free Distilled Water | Thermo Fisher | 10977049 | No | |
Molecular Grade 100% Ethanol (EtOH) | Thermo Fisher | BP2818 | Prepare solutions of 70%, 90% and 100% EtOH and store one at RT and one at -20°C | |
SureFISH hybridisation buffer | Agilent | G9400A | No | |
SureFISH custom-designed probe 50kb SNCA 4q22.1 | Agilent | G110902G-8 | No | |
SureFISH Wash Buffer 1 | Agilent | G9401A | No | |
SureFISH Wash Buffer 2 | Agilent | G9402A | No | |
SureFISH Chr7 CEP probe 767kb P20 GR | Agilent | G110899G-8 | No | |
Goat Serum | Sigma Aldrich | G9023 | Store in aliquots at -20°C | |
Triton™ X-100, BioXtra | Merck | T9284 | Prepare 0.2% Solution in 1X PBS stored at RT | |
PBS Tablets | Life Technologies | 18912014 | Prepare 1X with dH2O stored at RT | |
DAPI (4’, 6-diamidino-2-phenylindole, Dihydrochloride) | Sigma-Aldrich | D9542 | Prepare 1 mg/mL aliquots stored at -20°C | |
TrueBlack® Lipofuscin Autofluorescence Quencher | Biotium | 23007 | No | |
Prolong™ Gold Anti-Fade Mountant | Thermo Fisher | P36930 | No |
A | B | C | D | |
Antibody | Species | Supplier | Catalogue Ref. | |
Primary antibodies | ||||
SOX10 (SP267) | Rabbit | Abcam | Ab227680 | |
a-Syn (Syn 211) | Mouse | Santa-Cruz | sc-12767 | |
Secondary antibodies | ||||
Anti-Rabbit Alexa Fluorophore 647 | Goat | Thermo-Fisher | A21245 | |
Anti-Mouse Alexa Fluorophore 488 | Goat | Thermo-Fisher | A11001 |
A | B | C | D | |
Solution Name | Reagents | Volume | Final Concentration | |
Pepsin solution | 10% Pepsin aliquot | 50 μL | 0.01% | |
dH2O | 100 mL | |||
1M HCl | 1000 μL | 10 mM | ||
PBS/MgCl2 solution | 1X PBS | 100 mL | ||
1M MgCl2 | 100 μL | 1 mM | ||
Formamide solution | 99.5% Formamide | 70 mL | 70% | |
2M SSC | 30 mL | 0.6 M |
A | B | C | |
Reagent | Volume (μL) | Final % concentration | |
Custom-designed SureFISH probe 50kb SNCA 4q22.1 - Fluorophore 568 | 1 | 10 | |
SureFISH Chr7 CEP probe 767kb P20 GR – Fluorophore 488 | 1 | 10 | |
SureFISH Hybridisation buffer | 7 | 70 | |
Nuclease-free H2O | 1 | 10 | |
Total | 10 |
A | B | C | D | |
Solution Name | Reagent | Volume (μL) | Final concentration | |
Blocking Solution | Goat serum | 30 | 10% | |
0.2% Triton-X in 1X PBS | 270 | |||
Primary Antibody solution | Rabbit anti-SOX10 | 3 | 0.5 μg/mL | |
Mouse anti-Syn 211 | 0.75 | 1 μg/mL | ||
Goat serum | 3 | 2% | ||
0.2% Triton-X in 1X PBS | Adjust to 150 μL | |||
Secondary Antibody solution | Goat Anti-Rabbit Fluorophore 648 | 0.3 | 2 μg/mL | |
Goat Anti-Mouse Fluorophore 488 | 0.3 | 2 μg/mL | ||
Goat serum | 3 | 2% | ||
0.2% Triton-X in 1X PBS | Adjust to 150 μL | |||
TrueBlack solution | 20X TrueBlack Lipofuscin quencher | 10 | 1X | |
70% EtOH | 190 |