A | B | |
Name | Sequence | |
RiboS_linker | rCAAGCAGAAGACGGCATACGAGAT | |
RiboS_linker_primer | ATCTCGTATGCCGTCTTCTGCTTG | |
RiboS_IlluminaAdapt_TSO_UMI_RNA_F | ACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNNNGATrGrGrG | |
RiboS_blocking_oligo | CTACCCCAAGCAG | |
Index 1 Read | GATCGGAAGAGCACACGTCTGAACTCCAGTCAC[i7]ATCTCGTATGCCGTCTTCTGCTTG | |
Index 2 Read | AATGATACGGCGACCACCGAGATCTACAC[i5]ACACTCTTTCCCTACACGACGCTCTTCCGATCT |
A | B | |
Component | Volume (μl) | |
RNA and linker | 11 | |
RtcB Reaction Buffer (10X) | 2 | |
SUPERase·In (20 U/μl) | 1 | |
1 mM GTP | 2 | |
10 mM MnCl2 | 2 | |
RtcB RNA Ligase | 1.5 | |
H20 | 0 |
A | B | |
Component | Volume (μl) | |
RNA | 9 | |
RiboS_linker_primer (100uM; reverse transcription primer) | 2 | |
dNTP mix (10 mM each) | 2 |
A | B | |
Component | Volume (μl) | |
Template Switching RT Buffer | 5 | |
RiboS_IlluminaAdapt_TSO_UMI_RNA_F (75uM) | 1 | |
Template Switching RT Enzyme Mix | 1 |
A | B | |
Temp (C) | Time (m) | |
42 | 90 | |
85 | 5 | |
4 | 1 |
A | B | |
Component | Volume (μl) | |
10 µM Forward Index Primer | 2.5 | |
10 µM Reverse Index Primer | 2.5 | |
RiboS_blocking_oligo | 2 | |
2X Phusion Master Mix | 25 | |
TSO reaction | 18 |
A | B | C | |
Cycles | Temp (C) | Time (s) | |
1 | 98 | 30 | |
10 | 98 | 5 | |
60 | 5 | ||
1 | 72 | 10 |