Feb 22, 2022

Public workspaceProtocol in dev - Seq Analysis pipeline V.1

DOI
dx.doi.org/10.17504/protocols.io.byhmpt46
  • 1protocols.io
Emma Ganley
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DOI: dx.doi.org/10.17504/protocols.io.byhmpt46
Protocol Citation: Emma Ganley 2022. Protocol in dev - Seq Analysis pipeline. protocols.io https://dx.doi.org/10.17504/protocols.io.byhmpt46
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: In development
We are still developing and optimizing this protocol
Created: September 24, 2021
Last Modified: February 22, 2022
Protocol Integer ID: 53517
Abstract
test
Attachments
Icon for Example Doc.docx
Example Doc.docx
11KB
Section 1
Section 1
10m
10m

ABCD
1027
5
1519

ABCD
Amount0 µL Amount0 µL


=sum(a1,b1,c1)

Add Amount50 mL A
Add Amount100 mL B

Leave for Duration00:10:00



Add Amount50 µL

Amount50 µL

Note
Important note info here

10m
Pipetting
Step case

Step case 1
5 steps

Section 2
Section 2
10m
10m

Required
Cell number
Required
Dead cells

Download TEST_DOC.docxTEST_DOC.docx

Download latest version of
Software
SAMtools
NAME
Linux
OS
Wellcome Trust Sanger Institute
DEVELOPER
https://github.com/samtools/samtools
SOURCE LINK



Download latest dataset from
Dataset
My datasets
NAME
https://protocols.io/datasets
LINK



CITATION
Vöhringer HS, Sanderson T, Sinnott M, De Maio N, Nguyen T, Goater R, Schwach F, Harrison I, Hellewell J, Ariani CV, Gonçalves S, Jackson DK, Johnston I, Jung AW, Saint C, Sillitoe J, Suciu M, Goldman N, Panovska-Griffiths J, Wellcome Sanger Institute Covid-19 Surveillance Team., COVID-19 Genomics UK (COG-UK) Consortium., Birney E, Volz E, Funk S, Kwiatkowski D, Chand M, Martincorena I, Barrett JC, Gerstung M (2021). Genomic reconstruction of the SARS-CoV-2 epidemic in England.. Nature.
LINK
https://doi.org/10.1038/s41586-021-04069-y

CITATION
McCarthy M, Birney E (2021). Personalized profiles for disease risk must capture all facets of health.. Nature.
LINK
https://doi.org/10.1038/d41586-021-02401-0

Citations
Step 7
McCarthy M, Birney E. Personalized profiles for disease risk must capture all facets of health.
https://doi.org/10.1038/d41586-021-02401-0
Step 7
Vöhringer HS, Sanderson T, Sinnott M, De Maio N, Nguyen T, Goater R, Schwach F, Harrison I, Hellewell J, Ariani CV, Gonçalves S, Jackson DK, Johnston I, Jung AW, Saint C, Sillitoe J, Suciu M, Goldman N, Panovska-Griffiths J, Wellcome Sanger Institute Covid-19 Surveillance Team., COVID-19 Genomics UK (COG-UK) Consortium., Birney E, Volz E, Funk S, Kwiatkowski D, Chand M, Martincorena I, Barrett JC, Gerstung M. Genomic reconstruction of the SARS-CoV-2 epidemic in England.
https://doi.org/10.1038/s41586-021-04069-y