Protocol Citation: Joanna Bons, J P Rose, M A Watson, B Schilling 2024. Proteomic Analysis of Human Ovarian Cortex and Medulla Secretome Using Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) Acquisition by Data-Independent Acquisition (DIA) on an Orbitrap Eclipse Tribrid Mass Spectrometer. protocols.io https://dx.doi.org/10.17504/protocols.io.n92ld83bnv5b/v1 Manuscript citation: dx.doi.org/10.17504/protocols.io.e6nvw1px7lmk/v
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Protocol status: WorkingWe use this protocol and it's working
Created: March 25, 2024
Last Modified: April 08, 2024
Protocol Integer ID: 97359
Keywords: Human, Ovary, Secretome, SASP, Senescence, Doxorubicin, LC-MS/MS, DIA, Orbitrap Eclipse, Mass Spectrometry, Conditioned Media
Funders Acknowledgement:NIH Grant
Grant ID: 5U54AG075932-02
NIH Grant
Grant ID: 5U54AG075932-03
Conditioned Media Concentration with Amicon Ultra Centrifugal Filters
Conditioned Media Concentration with Amicon Ultra Centrifugal Filters
Protein Digestion with S-trap Spin Columns using Conditioned Concentrated Media
Protein Digestion with S-trap Spin Columns using Conditioned Concentrated Media
Proteolytic Peptide Desalting with C18 HLB Cartridges
Proteolytic Peptide Desalting with C18 HLB Cartridges
LC-MS/MS Acquisition by DIA on an Orbitrap Eclipse Tribrid Mass Spectrometer
LC-MS/MS Acquisition by DIA on an Orbitrap Eclipse Tribrid Mass Spectrometer
DIA Data Processing using Spectronaut/directDIA (Biognosys): Secretome Analysis
DIA Data Processing using Spectronaut/directDIA (Biognosys): Secretome Analysis