Mar 20, 2024
Version 3
Populating NCBI template for submissions using BioNumerics V.3
- Ruth Timme1,
- Maria Balkey1,
- Julie Haendiges1,
- Brian Sauders2,
- Tina Lusk Pfefer2
- 1US Food and Drug Administration;
- 2New York State Department of Agriculture & Markets
Protocol Citation: Ruth Timme, Maria Balkey, Julie Haendiges, Brian Sauders, Tina Lusk Pfefer 2024. Populating NCBI template for submissions using BioNumerics . protocols.io https://dx.doi.org/10.17504/protocols.io.36wgq3ejylk5/v3Version created by Maria Balkey
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: March 20, 2024
Last Modified: March 20, 2024
Protocol Integer ID: 97005
Keywords: NCBI submission, BioNumerics, biosample, SRA, metadata, bioproject,
Abstract
PURPOSE: to define the standard operating procedure for collecting isolate metadata using BioNumerics for submission of food/environmental isolates to NCBI.
SCOPE: to provide a standardized procedure to collect isolate metadata using BioNumerics for submission of food/environmental isolates to NCBI.
RESPONSIBILITIES- SOP Responsible Officials: Ruth Timme, Maria Balkey
The GenomeTrakr Network Management will be responsible to monitor GenomeTrakr submissions processed through Bionumerics and ensure that all GT labs are familiar with the mandatory metadata fields required for submission of GenomeTrakr sequencing records to NCBI.
V3: Dropdown menus from controlled vocabulary added to the ncbi_update submission sheet
New Version for this protocol
New Version for this protocol
Visit the new version of this protocol by clicking the following link: https://www.protocols.io/view/populating-ncbi-template-for-submissions-using-bio-3byl4qn4ovo5/v1