Mice, C57BL/6J (000664, Jackson Laboratories, Sacramento, CA), male and female 8-12 weeks old
Isoflurane
0.9% saline
wheat germ agglutinin-Alexa Fluor (WGA-AF) 448 (W11261, ThermoFisher Scientific)
0.01 M phosphate-buffer saline (PBS), stock solution 10X
paraformaldehyde (P6148, Millipore-Sigma)
Sylgard™ 184 silicone elastomer (Electron Microscopy Science, Hatfield, PA)
Acrylamide
VA-044 Initiator
A4F0 hydrogel (Yang et al. 2014): 4% acrylamide and 0.25% VA-044 Initiator in 0.01M PBS. (A4F0: 4% acrylamide without paraformaldehyde)
Sucrose
Primary antibodies (Table 1)
Secondary antibodies: donkey anti-rabbit IgG 555 or 647, donkey anti-rat IgG 594 (all purchased from ThermoFisher)
Normal donkey serum
Triton-X 100
OCT Compound (Tissue-PlusTM, 23-730-571, Fisher Scientific)
DAPI (4’, 6-diamidino-2-phenylindole; 62247, ThermoFisher Scientific)
RIMS (refractive index matching solution) (Yang et al. 2014)
Vectashield anti-fade mounting medium (Vector Laboratories, Burlingame, CA)
iSpacer (Sunjin Lab, Hsinchu City, Taiwan, R.O.C.) (Yuan
et al. 2021)