Mar 15, 2023

Public workspaceKraus et al., 2022 FBXO7 /Park15   V.2

  • 1Department of Cell Biology, Blavatnik Institute, Harvard Medical School, 240 Longwood Ave, Boston MA 02115, USA;
  • 2Aligning Science Across Parkinson’s (ASAP) Collaborative Research Network, Chevy Chase, MD 20815, USA
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Collection CitationFelix Kraus 2023. Kraus et al., 2022 FBXO7 /Park15  . protocols.io https://dx.doi.org/10.17504/protocols.io.kxygx99pwg8j/v2Version created by Felix Kraus
License: This is an open access collection distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this collection and it's working
Created: March 15, 2023
Last Modified: May 31, 2024
Collection Integer ID: 78871
Keywords: ASAPCRN
Funders Acknowledgement:
ASAP
Grant ID: ASAP-000282
Abstract
The protein kinase PINK1 and ubiquitin ligase Parkin promote removal of damaged mitochondria via a feed-forward mechanism involving ubiquitin (Ub) phosphorylation, Parkin activation, and ubiquitylation of mitochondrial outer membrane proteins to support recruitment of mitophagy receptors. The ubiquitin ligase substrate receptor FBXO7/PARK15 is mutated in an early-onset parkinsonian-pyramidal syndrome. Previous studies have proposed a role for FBXO7 in promoting Parkin-dependent mitophagy. Here, we systematically examine the involvement of FBXO7 in depolarization-dependent mitophagy in the well-established HeLa and induced-neurons cell systems. We find that FBXO7-/- cells have no demonstrable defect in: 1) kinetics of pUb accumulation, 2) pUb puncta on mitochondria by super-resolution imaging, 3) recruitment of Parkin and autophagy machinery to damaged mitochondria, 4) mitophagic flux, and 5) mitochondrial clearance as quantified by global proteomics. Moreover, global proteomics of neurogenesis in the absence of FBXO7 reveals no obvious alterations in mitochondria or other organelles. These results argue against a general role for FBXO7 in Parkin-dependent mitophagy and point to the need for additional studies to define how FBXO7 mutations promote parkinsonian-pyramidal syndrome.
Files
Protocol
Icon representing the file Flow cytometry-based measurement of mitophagic flux
Name
Flow cytometry-based measurement of mitophagic flux
Version 1
,
Felix Kraus
Protocol
Icon representing the file Whole-cell proteomics and Analysis by Tandem Mass Tagging-based proteomics
Name
ForkWhole-cell proteomics and Analysis by Tandem Mass Tagging-based proteomics
Version 1
,
Felix Kraus
Protocol
Icon representing the file Evaluation of pUb kinetics using 3D-SIM
Name
Evaluation of pUb kinetics using 3D-SIM
Version 1
,
Felix Kraus
Protocol
Icon representing the file Evaluation of mtKeima foci in induced neurons (iNeurons)
Name
Evaluation of mtKeima foci in induced neurons (iNeurons)
Version 1
,
Felix Kraus
Protocol
Icon representing the file Microscopy-based mtDNA turnover measurements in HeLa and iNeurons
Name
Microscopy-based mtDNA turnover measurements in HeLa and iNeurons
Version 1
,
Felix Kraus
Protocol
Icon representing the file Microscopy-based mitochondrial morphology measurements in iNeurons
Name
Microscopy-based mitochondrial morphology measurements in iNeurons
Version 1
,
Felix Kraus
Protocol
Icon representing the file Microscopy-based measurements of p62 recruitment in HeLa
Name
Microscopy-based measurements of p62 recruitment in HeLa
Version 1
,
Felix Kraus
Protocol
Icon representing the file Microscopy-based pUb-coverage measurements of mitochondria in iNeurons
Name
Microscopy-based pUb-coverage measurements of mitochondria in iNeurons
Version 1
,
Felix Kraus
Protocol
Icon representing the file Microscopy-based evaluation of mtKeima flux in hESC-derived Ctrl and FBXO7-/- iNeurons
Name
Microscopy-based evaluation of mtKeima flux in hESC-derived Ctrl and FBXO7-/- iNeurons
Version 2
,
Felix Kraus
Protocol
Icon representing the file Immunocytochemical analysis
Name
Immunocytochemical analysis
Version 1
,
Felix Kraus