Jan 26, 2023
Human axillary lymph node fine-needle aspirate sample processing and cyropreservation
- Jacqueline HY Siu1,
- Katrina M Pollock1,
- calliope.dendrou1
- 1University of Oxford
Protocol Citation: Jacqueline HY Siu, Katrina M Pollock, calliope.dendrou 2023. Human axillary lymph node fine-needle aspirate sample processing and cyropreservation. protocols.io https://dx.doi.org/10.17504/protocols.io.j8nlkw36wl5r/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: January 12, 2023
Last Modified: January 26, 2023
Protocol Integer ID: 75197
Keywords: FNA, lymph node, LN, fine-needle aspirate
Funders Acknowledgement:
Chan Zuckerberg Initiative
Grant ID: 2021-239944
Abstract
This protocol was used to generate a single-cell suspension from fine-needle aspirate samples of the adult human axillary lymph nodes and cyropreserved in CS10 for < 6 months. Cell yield was highly dependent on the participant; however, viability was >90% prior to freezing and between 80-90% after thawing (trypan blue dye exclusion).
Guidelines
- All steps should be performed at 4ºC unless stated otherwise.
Safety warnings
Sample preparation should be carried out in a Class II microbiological safety cabinet in a designated Containment Level 2 blood handling facility. Centrifuge steps should be performed in a designated blood-handling centrifuge with aerosol-tight inner lids.
Before start
Just prior to starting:
- Pre-cool centrifuge to 4ºC
- Pre-cool cyropreservation vials in the -20ºC
- Pre-cool cell freezing container if necessary
Reagents:
- R10 Media is made up with RPMI 1640 with 25 mM HEPES (Cat No: R5886, Sigma), 10% heat inactivated fetal bovine serum (HI-FBS) (Cat No: F4135, Sigma), 1% Pen/Strep (Penicillin-Streptomycin 10,000 Units/mL (Cat No: 15140-122, Gibco), and 2 mM of L-Glutamine (Cat No: 25030-024, Gibco). Sterile bottle 500 mL filter system 0.22 μM (Cat No: 430758/ 430769 Corning or Cat No: SEGPU0538/ SEGPU0545, Merck) or 0.22 μM syringe filters. Store at 4ºC when not in use for a maximum of 1 month.
- Cell Wash Buffer is made up with PBS with 2% human AB serum and 2 mM EDTA. Store at 4ºC when not in use.
Sample collection & transfer
Sample collection & transfer
Collect lymph node FNA samples in sterile filtered R10 media in 15 mL Falcon tubes. Transfer samples in an appropriate container and keep the tubes at 4ºC using cooled gel packs.
Sample processing
Sample processing
Upon sample arrival, top up tubes with cold RPMI + 5% human AB serum (serum has been previously heat inactivated and sterile filtered) as required to ensure even volumes.
1m
Centrifuge at 400xg at 4ºC for 10 min. 400 x g, 4°C, 00:10:00
10m
Remove the supernatant, resuspend in 5 mL of red blood cell (ACK) lysis buffer (Gibco, Cat: A10492-01). Incubate at room temperature for 5 min (check colour), up to 10 min max. Top up with cell wash buffer (PBS + 2% FBS, 2 mM EDTA). Room temperature
10m
Centrifuge at 400xg at 4ºC for 10 min. Wash again with cell wash buffer (PBS + 2% FBS, 2 mM EDTA). 400 x g, 4°C, 00:10:00
10m
Adjust final volume to 1 ml of cold RPMI + 5% AB serum.
1m
Take a 10µl aliquot of the cell suspension and dilute with 10µl Trypan Blue. Load this mixture onto a haemocytometer and perform a cell count.
5m
Sample cyropreservation
Sample cyropreservation
10m
10m
Label the tubes and chill at -20ºC for ~ 10 minutes. The minimum number should be ~500,000 cells (to be frozen in 100 µl; 100 µl is the minimum freezing volume). Aliquot cells such that there is a maximum of ~1 million cells per cryovial.
Add up to 10 ml of cold RPMI + 5% hAB serum to the tubes. Centrifuge at 400xg for 10 min at 4ºC.400 x g, 4°C, 00:10:00
10m
Resuspended samples in CS10 medium at a concentration of 1 ×106/100 µl.
1m
Once fully mixed, aliquot 100 µl of the sample into the chilled cryotubes.
1m
Transfer the cryotubes into appropriate cell freezing container. Ensure all slots of the MrFrosty are filled, using the filler vials if necessary.
2m
Transfer the samples into liquid nitrogen. Ideally this transfer should be performed within 24 hr, but may be extended to a maximum of 72 hr. Overnight