A | B | C | |
Primer Set | Direction | Sequence | |
Rv0678 | F1 | ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcgatccgctgtggcttggc | |
Rv0678 | F2 | GACTGGAGTTCAGACGTGTGCTCTTCCGATCTgccgctcgggatcacacacc | |
Rv0678 | R1 | GACTGGAGTTCAGACGTGTGCTCTTCCGATCTttgactcggttggcgggtcg | |
Rv0678 | R2 | ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgacgagcgcctcgttgttg | |
Illumina adapter primer | F | AATGATACGGCGACCACCGAGATCTACAC[i5]ACACTCTTTCCCTACACGACGCTCTTCCGATCT | |
Illumina adapter primer | R | GATCGGAAGAGCACACGTCTGAACTCCAGTCAC[i7]ATCTCGTATGCCGTCTTCTGCTTG | |
Illumina_quant_Inner | F | ACACTCTTTCCCTACACGACGCTCTTCCGATCT | |
Illumina_quant_Inner | R | GACTGGAGTTCAGACGTGTGCTCTTCCGATCT | |
Illumina_quant_Outer | F | CAAGCAGAAGACGGCATACGAGAT | |
Illumina_quant_Outer | R | AATGATACGGCGACCACCGAGATC |
A | B | |
COMPONENT | Volume (µl) | |
5X Q5 Reaction Buffer | 10 | |
5X Q5 High GC Buffer | 10 | |
10 mM dNTPs | 1 | |
Q5 High-Fidelity DNA Polymerase | 0.5 | |
10µM Forward primer 1 | 1 | |
10µM Reverse primer 2 | 1 | |
20 mg/ml BSA | 5 | |
Template DNA (~1ng/ul) | 5 | |
Nuclease-Free Water | 18.5 |
A | B | C | D | |
Step | Temp (C) | Time (s) | Cycles | |
Denaturation | 98 | 120 | 1 | |
Denaturation | 98 | 10 | 10 | |
Annealing | 64 | 15 | ||
Extension | 72 | 45 | ||
Extension | 4 | Forever | 1 |
A | B | |
COMPONENT | Volume (µl) | |
10µM Forward primer 2 | 0.15 | |
10µM Reverse primer 1 | 0.15 | |
10µM Forward Illumina adapter primer | 0.35 | |
10µM Reverse Illumina adapter primer | 0.35 |
A | B | C | D | |
Step | Temp (C) | Time (s) | Cycles | |
Denaturation | 98 | 10 | 1 | |
Denaturation | 98 | 10 | 20 | |
Annealing | 65 | 15 | ||
Extension | 72 | 30 | ||
Extension | 72 | 120 | 1 |
A | B | |
COMPONENT | Volume (µl) | |
PowerUp SYBR Green Master Mix (2X) | 5 | |
10µM Forward primer | 0.5 | |
10µM Reverse primer | 0.5 | |
Diluted amplicon | 2 | |
Nuclease-Free Water | 2 |
A | B | C | D | E | |
Step | Temp (C) | Time (s) | Cycles | Ramp Rate (C/s) | |
UDG activation | 50 | 120 | 1 | 2.73 | |
Denaturation | 95 | 120 | 1 | 2.73 | |
Denaturation | 95 | 1 | 2.73 | ||
Amplification | 60 | 30 | 2.11 | ||
Capture | 60 | 0 | – | ||
Melt Curve | 95 | 1 | 1 | 2.73 | |
60 | 20 | 1 | 2.11 | ||
95 | – | 1 | 0.15 | ||
Capture | – | 1 | – |
A | B | |
Application or product: | Custom Content | |
Genome or region size (Mbases) | 0.001 | |
Read length | 600 | |
On target (%) | 95 | |
Coverage (x) | 50000 | |
Duplicates (%) | 0 | |
Instrument | MiSeq | |
Run type | v3 Reagents | |
Clusters | 25,000,000 per flow cell | |
Output per unit (flow cell or lane) | 15,000,000,000 per flow cell | |
Exceeds maximum read length? | Does not exceed maximum (2x300) | |
Number of units per sample (flow cell or lane) | 0.004 flow cells | |
Samples per unit (flow cell or lane) | 285/flow cell Most Illumina library prep kits enable up to 96 indexes; Nextera XT up to 384 indexes. | |
Comments | Upgraded software; MCS v2.3 or later; MiSeq Reagent Kit v3 (150/600) | |
Product | MiSeq Reagent Kit v3 | |
Link | http://www.illumina.com/products/miseq-reagent-kit-v3.html |