| Field | Description | Example |
| sample_name | Include the same ID here as you entered for "sample_name" in the BioSample submission template.
Populate this field using the values in the PHA4GE specification for "specimen collector sample ID". | UT-12345 |
| library_ID | The library name should be a unique ID relevant to your workflow. It can be an autogenerated ID from your LIMS system or a modification of your sample_name.
Populate this field using the values in the PHA4GE specification for "library_id". | UT-12345.6 |
| Title | Short, free text description that identifies the data on public pages.
For Example:
{methodology} of {organism}: {sample_name} | WGS of Salmonella enterica: UT-12345 |
| library_strategy | Overall sequencing strategy or approach.
Choose from NCBI pick list | See NCBI SRA pick list. (e.g. WGS) |
| library_source | molecule type used to make the library | See NCBI SRA pick list. (e.g. Genomic) |
| library_selection | Library capture method | See NCBI SRA pick list. (e.g. random, PCR) |
| Library_layout | Choose from NCBI pick list | See NCBI SRA pick list, choose "paired" |
| platform | Sequencing platform | See NCBI SRA pick list. (e.g., Illumina). |
| instrument_model | Name of the sequencing instrument. | See NCBI SRA pick list. (e.g. Illumina MiSeq, iSeq 100) |
| Design_description | optional field for free text description of methods | |
| Filetype | File format name for the raw sequence data
Choose from NCBI pick list | See NCBI SRA pick list. (e.g. Fastq) |
| Filename | include ALL of the files resulting from this library. **Add additional fields if there are more than two files (e.g. Filename3).
Populate this field using the values in the PHA4GE specification for "r1 fastq filename". | genome_r1.fastq (*must be exact) |
| Filename2 | genome_r2.fastq (*must be exact)
Populate this field using the values in the PHA4GE specification for "r2 fastq filename". | genome_r2.fastq (*must be exact) |
| Filename3-8 | list other fastq file names (e.g. for NextSeq data) | |