May 23, 2023

Public workspaceFluorescence in situ hybridization (FISH)

DOI
dx.doi.org/10.17504/protocols.io.kqdg39mmeg25/v1
  • Peter Sims1
  • 1Columbia University
Ngan Kim Tran
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DOI: dx.doi.org/10.17504/protocols.io.kqdg39mmeg25/v1
Protocol Citation: Peter Sims 2023. Fluorescence in situ hybridization (FISH). protocols.io https://dx.doi.org/10.17504/protocols.io.kqdg39mmeg25/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: May 23, 2023
Last Modified: May 31, 2024
Protocol Integer ID: 82320
Keywords: ASAPCRN
Funders Acknowledgement:
ASAP
Grant ID: ASAP-000375
Abstract
Fluorescence in situ hybridization (FISH) mRNA
Mouse brain sections were prepared, removed from cryoprotectant solution, and washed three times in tris-buffered saline (TBS) at room temperature.
Sections were incubated with hydrogen peroxide (ACD) for 15 min at room temperature, washed several times in TBS, and then mounted to Superfrost slides.
Sections were allowed to dry for 10 min and a hydrophobic barrier (PAP pen, Vector Labs) was created around the tissue.
Tissue was incubated in 50% EtOH, then 70% EtOH, then 100% EtOH for 5 min each.
Sections were rehydrated in TBS for several minutes, digested withProteaseIV (ACD) for 25 min at room temperature, and rinsed twice with TBS before proceeding to the RNA Scope Multiplex Fluorescent v2 assay (ACD).
The RNA Scope Multiplex Fluorescent v2 assay was conducted according to the manufacturer’s instructions, with all incubations taking place in a humidified chamber at 40 °C.
Two 5-minute washes in excess RNA Scope Wash Buffer (ACD) took place between each incubation in sequential order: probes (2-hours), AMP1 (30 min), AMP2 (30 min), AMP3 (15 min), HRP-C1/2/3 (15 min), TSA Cy3 (30 min), HRP blocker (30 min), HRP-C1/2/3 (15 min), and TSA Cy5 (30 min).
Samples were washed twice more in RNA Scope Wash Buffer, then twice more in TBS.
Samples were then blocked and immunostained for tyrosine hydroxylaseas.
After immunostaining, samples were mounted in Fluoromount G and stored at 4 °C for up to 1 week before imaging.