Aug 16, 2023
Dopamine neuron enrichment using MACS
- Tae Wan Kim1
- 1MSKCC
Protocol Citation: Tae Wan Kim 2023. Dopamine neuron enrichment using MACS. protocols.io https://dx.doi.org/10.17504/protocols.io.n92ldmmpnl5b/v1
Manuscript citation:
TNF-NFkB-p53 axis restricts in vivo survival of hPSC-derived dopamine neuron
Tae Wan Kim, So Yeon Koo, Markus Riessland, Hyunwoo Cho, Fayzan Chaudhry, Benjamin Kolisnyk, Marco Vincenzo Russo, Nathalie Saurat, Sanjoy Mehta, Ralph Garippa, Doron Betel, Lorenz Studer
bioRxiv 2023.03.29.534819; doi: https://doi.org/10.1101/2023.03.29.534819
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: August 16, 2023
Last Modified: May 31, 2024
Protocol Integer ID: 86535
Keywords: ASAPCRN
Funders Acknowledgement:
ASAP
Grant ID: ASAP-000472
Abstract
high yield DA neuron sorting via MACS but using surface marker strategy described recently (Kim et al.,BioRxiv).
Cell dissociation
Cell dissociation
Use Worthington Papain Dissociation System (LK003150) to dissociate at day 25 of Studer lab dopamine neuron protocol. Add 32 mls of EBSS (vial 1) to the albumin ovomucoid inhibitor mixture (vial 4) and allow the contents to dissolve while preparing the other components. Mix before using and equilibrate within 5% CO2 incubator. Reconstitute for the first use, then store and reuse.
Add 5 mls of EBSS (vial 1) to a papain vial (vial 2). Place vial 2 in a 37°C water bath for ten minutes or until the papain is completely dissolved and the solution appears clear. If solution appears alkaline (red or purple) equilibrate the solution with 95% O2:5%CO2.
Add 500 µls of EBSS to a DNase vial (vial 3). Mix gently -- DNase is sensitive to shear denaturation. Add 250µls of this solution to the vial containing the papain. This preparation contains a final concentration of approximately 20 units/ml papain and 0.005% DNase.
Place 1ml papain solution per 6-well and incubate at 37°C, 5% CO2 for 45 min to 90 min, periodically agitating the plate.
Gently triturate the mixture with 10ml pipette
Carefully remove the cloudy cell suspension, place in sterile screw capped tube and centrifuge at 300g for 5 minutes at room temperature.
Mix 2.7 mls EBSS (vial 1) with 300µls reconstituted albumin-ovomucoid inhibitor solution (vial 4) in a sterile tube. Add 150 µls of DNase solution (vial 3)
Discard supernatant and immediately resuspend cell pellet in DNase dilute albumin-inhibitor solution
Discard the supernatant and immediately resuspend the pelleted cells in MACS buffer (PBS without Ca2+/Mg2+, 5% BSA, 2mM EDTA) and count cells
CD49 negative selection
CD49 negative selection
Add CD49e-Biotin (Miltenyi, 130-110-532) at 1in50 dilution and incubate for 5-10 minutes at (2−8 °C). Note: 1) Incubating on ice can require longer staining times, 2) Neuron yield is directly affected by the quality of the differentiation, it is advisable to perform quality control on your cells at day 11 and day 16 to assess % of on-target cells, 3) Yield may also be improved by performing a titration of the antibody
Wash cells twice by adding 1−2 mL of buffer per 10⁷ cells and centrifuge at 300×g for 10 minutes. Aspirate supernatant completely.
Resuspend cell pellet in 80ul per 10⁷ total cells.
Add 20 µL of Anti-Biotin MicroBeads (Miltenyi, 130-090-485) per 10⁷ total cells and incubate for 15 minutes at (2−8 °C).
Wash cells by adding 1−2 mL of buffer per 10⁷ cells and centrifuge at 300×g for 10 minutes. Aspirate supernatant completely.
Resuspend 1.25x10⁸ cells in 500 µL of buffer (for LD columns)
Place LD Column (Miltenyi, 130-042-901) in the magnetic field of a suitable MACS Separator.
Prepare column by rinsing with 2 mL of buffer
Apply cell suspension onto the column.
Collect unlabeled cells that pass through and wash column with 2×1 mL of buffer.
Collect total effluent; this is the unlabeled cell fraction (CD49e negative), Perform washing steps by adding buffer two times. Only add new buffer when the column reservoir is empty.
You may wish to collect CD49e positive fraction (off-target or neural progenitor cells), to do so, add 2x1ml buffer and gently use the provided plunger with the LD columns in a separate tube
Centrifuge cells 300xg for 10 minutes
Wash with MACS buffer and centrifuge 300xg for 10 minutes
CD184 postivie selection
CD184 postivie selection
Resuspend cells in 90ul MACS buffer and add 10 µl of a CXCR4-microbead antibody (Miltenyi, 130-100-070) per 10⁷ cells for 10 minutes at (2−8 °C).
Scale volumes accordingly
Wash cells by adding 1−2 mL of buffer per 10⁷ cells and centrifuge at 300×g for 10 minutes. Aspirate supernatant completely.
Resuspend up to 10⁸ cells in 500 µL of buffer (LS columns)
Place LS column (Miltenyi, 130-042-401) in the magnetic field of a suitable MACS Separator.
Prepare column by rinsing with 3 mL MACS buffer
Apply cell suspension onto the column. Collect flow-through containing unlabeled cells (CD184 negative).
Wash column with the appropriate amount of buffer. Collect unlabeled cells that pass through and combine with the effluent from
Note: Perform washing steps by adding buffer aliquots only when the column reservoir is empty.
Remove column from the separator and place it on a suitable collection tube.
Pipette the 5ml MACS buffer and immediately flush out the magnetically labeled cells by firmly pushing the plunger into the column. To increase the purity of magnetically labeled cells, the eluted fraction can be enriched over a second LS Column.
Centrifuge cells 300xg for 10 minutes
Resuspend cells in 1ml Day 25 media and count
Plate 150,000 CD49e negative / CD184 positive cells per cm2 in 4ml Day 25 media (Studer lab dopamine neuron protocol)