Apr 29, 2022
Antibiotic Sensitivity Assay for Heterometopus palaeformis (strain RAJCA)
- Fatma Gomaa1,
- Johana Rotterova2,
- Roxanne Berinate2,
- Maria Pachiadaki3,
- Virginia Edgcomb3
- 1Harvard University;
- 2University of Rhode Island;
- 3Woods Hole Oceanographic Institution
Protocol Citation: Fatma Gomaa, Johana Rotterova, Roxanne Berinate, Maria Pachiadaki, Virginia Edgcomb 2022. Antibiotic Sensitivity Assay for Heterometopus palaeformis (strain RAJCA). protocols.io https://dx.doi.org/10.17504/protocols.io.x54v9y3mzg3e/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it’s working
Created: April 29, 2022
Last Modified: April 29, 2022
Protocol Integer ID: 61694
Abstract
Goal: To determine the optimal concentration of three antibiotics, Puromycin, Geneticin (G418) and Blasticidin, that will effectively inhibit the cells growth and division of Heterometopus palaeformis.
We examined the cells viability and growth rate in the presence of different concentrations of these antibiotics (Table 1, 2 &3). These antibiotics are routinely used for selecting the transformed eukaryotic cells. The choice of puromycin was based on previous transfection protocol on ciliate, T. thermophila (Iwamoto et al., 2014; Gene). The Geneticin (G418) was used by our group for selecting transformed Bodo saltans with plasmids carrying neomycin resistance gene (Neo).
Procedure:
-The experiments were carried in 5-ml Eppendorf tubes to cut down on the volume of the antibiotic that will be used.
-The tubes were filled with 4 ml cerophyl culture medium.
-Add the antibiotics at the final concentrations shown in the tables below.
-In total there were 6-7 tubes per assay, including the control with no antibiotic treatment.
-Transfer 1ml of cells from RAJCA culture at log phase to each of the tubes.
-Inspect the cells every couple of days under inverted microscope to check for any evidence of cell toxicity and count the number of live cells.
-The optimal dose of antibiotic for selection is the lowest one for which all cells have died after 7 to 12 days. A low dose is the concentration which has minimal effects on cells after 2 weeks of antibiotic treatment. Conversely, a high dose is a concentration which is highly toxic to cells within 1-3 days of starting antibiotic treatment.
Results:
A-Puromycin
Results indicate that puromycin at concentration of 300 μg/ml kills the entire population in 10 to 12 days. Using lower puromycin concentration ( i. e., 200 μg/mL) was inefficient as the cells maintained to grow for longer that two weeks.
Table 1
| A | B | |
| Puromycin (μg/ml) | Cells survival (days) Exp.1 – Exp.2 | |
| 300 | 10-12 | |
| 200 | 16-12 | |
| 100 | >16->16 | |
| 50 | >16->16 | |
| 20 | >16->16 | |
| 5 | >16->16 | |
| 0 | >16->16 |
B-Geneticin (G418)
G418 is an effective antibiotic to kill the H. palaeformis wild type cells at different concentrations. Our results show that G418 of concentration 20 μg/mL kills the entire population of cells in approximately 10 days, which is considered enough time for the selection of resistant cells after transfection. We will use this antibiotic as a second choice if needed after the puromycin.
Table 2
| Geneticin/ G418 (μg/ml) | Cells survival (days) | |
| 200 | <4 | |
| 100 | <4 | |
| 50 | 6 | |
| 20 | 10 | |
| 10 | 14 | |
| 0 | >16 |
C-Blasticidin
Blasticidin was supplemented at different concentrations to H. palaeformis cultures. However, our results show that blasticidin didn’t have any lethal effect on the cells. Although the growth rate for the cells in presence of the blasticidin were lower than the control cultures (based on cell count ). But cells remained alive and active for more than 2 weeks period at the highest concentration that we used (300 μg/ml). Therefore, we excluded Blasticidin from our list.
Table 3
| Blasticidin (μg/ml) | Cells survival (days) | |
| 300 | >16 | |
| 200 | >16 | |
| 100 | >16 | |
| 50 | >16 | |
| 10 | >16 | |
| 0 | >16 |