Use of 14-ml BD Falcon polypropylene round-bottom tubes: It is important that 14-ml BD Falcon polypropylene round-bottom tubes (BD Biosciences Catalog #352059) are used for the transformation protocol, since other tubes may be degraded by β-mercaptoethanol. In addition, the duration of the heat pulse has been optimized using these tubes.
Aliquoting Cells: Keep the cells on ice at all times during aliquoting. It is essential that the polypropylene tubes are placed on ice before the cells are thawed and that the cells are aliquoted directly into pre-chilled tubes. It is also important to use 100 μl of cells per transformation. Decreasing the volume will reduce efficiency.
Use of β-Mercaptoethanol (β-ME): β-ME has been shown to increase transformation efficiency. The β-ME mixture provided is diluted and ready to use. Stratagene cannot guarantee results with β-ME from other sources.
Use of NZY+ Broth: Transformation of the supplied ultracompetent cells has been optimized using NZY+ as the medium for outgrowth following the heat pulse. Substitution with another outgrowth medium may result in a loss of efficiency.
Quantity and Volume of DNA: The greatest efficiency is obtained from the transformation of 1 μl of 0.01 ng/μl supercoiled pUC18 DNA per 100 μl of cells. When transforming a ligation mixture, add 2 μl of the ligation mixtureper 100 μl of cells. A greater number of colonies may be obtained by transforming up to 50 ng DNA, although the resulting efficiency (cfu/μg) may be lower. The volume of the DNA solution added to the reaction may be increased to up to 10% of the reaction volume, but the transformation efficiency may be reduced.
Heat Pulse Duration and Temperature: Optimal transformation efficiency is observed when cells are heat-pulsed at 42°C for 30 seconds. Efficiency decreases sharply when cells are heat-pulsed for <30 seconds or for >40 seconds. Do not exceed 42°C.
Plating the Transformation Mixture: If plating <100 μl of cells, pipet the cells into a 200 μl pool of medium and then spread the mixture with a sterile spreader. If plating â¥100 μl, the cells can be spread on the plates directly. Tilt and tap the spreader to remove the last drop of cells. If desired, cells may be concentrated prior to plating by centrifugation at1000 rpm for 10 minutes followed by resuspension in 200 μl of NZY+ medium.